Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ07962.1Membrane protein, putative. (228 aa)    
Predicted Functional Partners:
EAQ07961.1
Hypothetical protein; COG0778 Nitroreductase.
  
    0.878
EAQ07959.1
Hypothetical protein.
       0.617
EAQ07975.1
Phosphatidylcholine synthase; Condenses choline with CDP-diglyceride to produce phosphatidylcholine and CMP; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
     0.569
EAQ05291.1
Hypothetical protein.
  
     0.532
EAQ05846.1
Dihydroneopterin aldolase, putative; COG1539 Dihydroneopterin aldolase.
 
     0.481
EAQ06796.1
Hypothetical protein.
  
     0.465
EAQ07960.1
Deacetylase / probable acetylpolyamine aminohydrolase; COG0123 Deacetylases, including yeast histone deacetylase and acetoin utilization protein.
       0.457
EAQ06621.1
Hypothetical protein.
  
     0.436
EAQ07641.1
Hypothetical protein.
  
     0.409
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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