EAQ07964.1 protein (Yoonia vestfoldensis SKA53)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EAQ07964.1

methylmalonyl-CoA epimerase; COG0346 Lactoylglutathione lyase and related lyases. (134 aa)

Predicted Functional Partners:

EAQ07066.1

0.990

EAQ06790.1

0.978

EAQ07061.1

0.958

EAQ06792.1

0.865

EAQ05674.1

0.804

EAQ07064.1

0.799

EAQ07940.1

0.796

EAQ05673.1

0.772

EAQ07963.1

0.721

EAQ05534.1

0.715

Your Current Organism:

Yoonia vestfoldensis SKA53

NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EAQ05534.1	EAQ07964.1	SKA53_00569	SKA53_09579	COG1171 Threonine dehydratase.	methylmalonyl-CoA epimerase; COG0346 Lactoylglutathione lyase and related lyases.	0.715
EAQ05673.1	EAQ05674.1	SKA53_06202	SKA53_06207	COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit.	Methylcrotonyl-CoA carboxylase beta chain; COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).	0.999
EAQ05673.1	EAQ06790.1	SKA53_06202	SKA53_14621	COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit.	COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit.	0.863
EAQ05673.1	EAQ07061.1	SKA53_06202	SKA53_01656	COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit.	COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).	0.996
EAQ05673.1	EAQ07066.1	SKA53_06202	SKA53_01681	COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit.	COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit.	0.868
EAQ05673.1	EAQ07964.1	SKA53_06202	SKA53_09579	COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit.	methylmalonyl-CoA epimerase; COG0346 Lactoylglutathione lyase and related lyases.	0.772
EAQ05674.1	EAQ05673.1	SKA53_06207	SKA53_06202	Methylcrotonyl-CoA carboxylase beta chain; COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).	COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit.	0.999
EAQ05674.1	EAQ06790.1	SKA53_06207	SKA53_14621	Methylcrotonyl-CoA carboxylase beta chain; COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).	COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit.	0.537
EAQ05674.1	EAQ07064.1	SKA53_06207	SKA53_01671	Methylcrotonyl-CoA carboxylase beta chain; COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).	COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit.	0.996
EAQ05674.1	EAQ07066.1	SKA53_06207	SKA53_01681	Methylcrotonyl-CoA carboxylase beta chain; COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).	COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit.	0.537
EAQ05674.1	EAQ07964.1	SKA53_06207	SKA53_09579	Methylcrotonyl-CoA carboxylase beta chain; COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).	methylmalonyl-CoA epimerase; COG0346 Lactoylglutathione lyase and related lyases.	0.804
EAQ06790.1	EAQ05673.1	SKA53_14621	SKA53_06202	COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit.	COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit.	0.863
EAQ06790.1	EAQ05674.1	SKA53_14621	SKA53_06207	COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit.	Methylcrotonyl-CoA carboxylase beta chain; COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).	0.537
EAQ06790.1	EAQ06792.1	SKA53_14621	SKA53_14631	COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit.	Alcohol dehydrogenase; COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases.	0.939
EAQ06790.1	EAQ07061.1	SKA53_14621	SKA53_01656	COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit.	COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).	0.712
EAQ06790.1	EAQ07064.1	SKA53_14621	SKA53_01671	COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit.	COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit.	0.863
EAQ06790.1	EAQ07066.1	SKA53_14621	SKA53_01681	COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit.	COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit.	0.999
EAQ06790.1	EAQ07940.1	SKA53_14621	SKA53_09459	COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit.	ATPase; COG1703 putative periplasmic protein kinase ArgK and related GTPases of G3E family.	0.983
EAQ06790.1	EAQ07964.1	SKA53_14621	SKA53_09579	COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit.	methylmalonyl-CoA epimerase; COG0346 Lactoylglutathione lyase and related lyases.	0.978
EAQ06792.1	EAQ06790.1	SKA53_14631	SKA53_14621	Alcohol dehydrogenase; COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases.	COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit.	0.939