STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ07965.1COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (238 aa)    
Predicted Functional Partners:
EAQ06061.1
Hypothetical protein; COG0642 Signal transduction histidine kinase.
  
 0.969
EAQ06345.1
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
  
 0.956
EAQ06346.1
Methyl-accepting chemotaxis protein McpD; COG2202 FOG: PAS/PAC domain.
  
 0.956
EAQ06001.1
Serine/Threonine protein kinase and Signal Transduction Histidine Kinase; COG2202 FOG: PAS/PAC domain.
  
 0.947
EAQ07462.1
Sensory box-containing diguanylate cyclase, putative; COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.
  
 0.877
EAQ07807.1
Hypothetical protein; COG2199 FOG: GGDEF domain.
  
 0.877
EAQ06517.1
COG0840 Methyl-accepting chemotaxis protein.
  
 0.866
EAQ06858.1
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
  
 0.866
EAQ07165.1
Sensor histidine kinase; COG0591 Na+/proline symporter.
   
 0.854
EAQ05201.1
Sensory box sensor histidine kianse/response regulator; COG0642 Signal transduction histidine kinase.
 
 0.816
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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