STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ07986.1Transcriptional regulators, LysR family; COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (295 aa)    
Predicted Functional Partners:
EAQ07984.1
COG0146 N-methylhydantoinase B/acetone carboxylase, alpha subunit.
 
     0.638
EAQ07985.1
Hydantoin utilization protein; COG0145 N-methylhydantoinase A/acetone carboxylase, beta subunit.
 
     0.625
EAQ07983.1
Hypothetical protein; COG0665 Glycine/D-amino acid oxidases (deaminating).
 
     0.618
EAQ07982.1
Hypothetical protein; COG0451 Nucleoside-diphosphate-sugar epimerases.
 
     0.573
EAQ08212.1
Glutamine-pyruvate aminotransferase; COG0067 Glutamate synthase domain 1.
     
 0.536
EAQ07988.1
Transcriptional regulator, MarR family; COG1846 Transcriptional regulators.
  
    0.530
EAQ07987.1
Twin-arginine translocation pathway signal sequence domain protein; COG2217 Cation transport ATPase.
       0.528
EAQ06869.1
Transcriptional regulator, LysR family; COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.401
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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