STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ08000.1COG3333 Uncharacterized protein conserved in bacteria. (503 aa)    
Predicted Functional Partners:
EAQ08002.1
COG3181 Uncharacterized protein conserved in bacteria.
 
  
 0.934
EAQ08001.1
Hypothetical protein; COG0395 ABC-type sugar transport system, permease component.
 
 
 0.918
EAQ07710.1
TRAP-T family transporter, periplasmic binding protein; COG3181 Uncharacterized protein conserved in bacteria.
 
  
 0.891
EAQ05753.1
COG3181 Uncharacterized protein conserved in bacteria.
 
  
 0.868
EAQ07711.1
Hypothetical membrane protein.
 
 
 0.678
EAQ07998.1
2-dehydropantoate 2-reductase; COG1893 Ketopantoate reductase.
       0.489
EAQ07999.1
COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
       0.486
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.