Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ08000.1COG3333 Uncharacterized protein conserved in bacteria. (503 aa)    
Predicted Functional Partners:
EAQ08002.1
COG3181 Uncharacterized protein conserved in bacteria.
 
  
 0.937
EAQ08001.1
Hypothetical protein; COG0395 ABC-type sugar transport system, permease component.
 
 
 0.912
EAQ07710.1
TRAP-T family transporter, periplasmic binding protein; COG3181 Uncharacterized protein conserved in bacteria.
 
  
 0.895
EAQ05753.1
COG3181 Uncharacterized protein conserved in bacteria.
 
  
 0.873
EAQ07711.1
Hypothetical membrane protein.
 
 
 0.660
EAQ07998.1
2-dehydropantoate 2-reductase; COG1893 Ketopantoate reductase.
       0.487
EAQ07999.1
COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
       0.486
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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