Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ08002.1COG3181 Uncharacterized protein conserved in bacteria. (323 aa)    
Predicted Functional Partners:
EAQ08000.1
COG3333 Uncharacterized protein conserved in bacteria.
 
  
 0.937
EAQ08001.1
Hypothetical protein; COG0395 ABC-type sugar transport system, permease component.
 
  
 0.935
EAQ07712.1
COG3333 Uncharacterized protein conserved in bacteria.
 
  
 0.894
EAQ05756.1
COG3333 Uncharacterized protein conserved in bacteria.
 
  
 0.892
EAQ08003.1
COG0589 Universal stress protein UspA and related nucleotide-binding proteins.
 
     0.728
EAQ07711.1
Hypothetical membrane protein.
 
  
 0.657
EAQ07998.1
2-dehydropantoate 2-reductase; COG1893 Ketopantoate reductase.
 
    0.421
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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