Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ08016.1ABC oligopeptide transporter, ATP-binding subunit oppD; COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Belongs to the ABC transporter superfamily. (322 aa)    
Predicted Functional Partners:
EAQ08015.1
COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
  0.997
EAQ08014.1
COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
  0.992
EAQ07603.1
Peptide/opine/nickel uptake family ABC transporter, permease protein; COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
  0.980
EAQ05321.1
ABC transporter permease protein; COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
  0.974
EAQ08013.1
COG4166 ABC-type oligopeptide transport system, periplasmic component.
 
 
 0.972
EAQ08017.1
Oligopeptide ABC transporter, ATP-binding protein; COG4608 ABC-type oligopeptide transport system, ATPase component; Belongs to the ABC transporter superfamily.
 
  
 
0.945
EAQ05708.1
COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
  0.932
EAQ05320.1
ABC transporter ATP-binding protein; COG4608 ABC-type oligopeptide transport system, ATPase component; Belongs to the ABC transporter superfamily.
 
 
0.917
EAQ05322.1
ABC transporter permease protein; COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
  0.892
EAQ05709.1
COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
  0.877
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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