STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ08027.1Threonine aldolase, low-specificity; COG3616 Predicted amino acid aldolase or racemase. (387 aa)    
Predicted Functional Partners:
EAQ08026.1
COG1171 Threonine dehydratase.
 
  
 0.944
EAQ08025.1
Serine--glyoxylate transaminase, putative; COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase.
 
     0.927
EAQ08028.1
COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog.
 
   
 0.921
EAQ08024.1
Transcriptional regulator, IclR family; COG1414 Transcriptional regulator.
 
     0.840
EAQ05534.1
COG1171 Threonine dehydratase.
    
  0.782
EAQ06020.1
Transcriptional regulator, LysR family; COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.464
EAQ07101.1
COG0346 Lactoylglutathione lyase and related lyases.
   
 
  0.452
EAQ07663.1
Hypothetical protein; COG0346 Lactoylglutathione lyase and related lyases.
   
 
  0.401
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.