Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ08040.1COG1376 Uncharacterized protein conserved in bacteria. (221 aa)    
Predicted Functional Partners:
EAQ07507.1
ErfK/YbiS/YcfS/YnhG family protein; COG3034 Uncharacterized protein conserved in bacteria.
 
  
 0.651
EAQ06208.1
Hypothetical protein.
  
     0.467
EAQ07743.1
Hypothetical protein; COG3106 Predicted ATPase.
  
     0.447
mepA
COG3770 Murein endopeptidase.
  
     0.433
EAQ05906.1
Transglycosylase SLT domain protein; COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains).
  
     0.431
EAQ07742.1
COG3768 Predicted membrane protein.
  
     0.406
EAQ08041.1
Creatinase; COG0006 Xaa-Pro aminopeptidase.
       0.405
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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