STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ08057.1COG5469 Predicted metal-binding protein. (149 aa)    
Predicted Functional Partners:
EAQ08058.1
Cobalamin biosynthetic protein CobC; COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase.
 
     0.866
cobD
Cobalamin biosynthesis protein CobD; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.
       0.847
EAQ08049.1
Precorrin-3B C17-methyltransferase region; COG2073 Cobalamin biosynthesis protein CbiG.
 
     0.789
EAQ08051.1
CobL, precorrin-6Y C5,15-methyltransferase; COG2241 Precorrin-6B methylase 1.
 
     0.779
EAQ08063.1
cobW protein, putative; COG0523 putative GTPases (G3E family).
 
    0.747
EAQ08053.1
Hypothetical protein.
  
     0.725
EAQ08050.1
Cobalamin biosynthesis precorrin-2 methyltransferase; COG2243 Precorrin-2 methylase; Belongs to the precorrin methyltransferase family.
 
     0.621
EAQ08056.1
COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
       0.613
EAQ08066.1
cobN protein; COG1429 Cobalamin biosynthesis protein CobN and related Mg-chelatases.
 
     0.559
EAQ08060.1
Hypothetical protein; COG2951 Membrane-bound lytic murein transglycosylase B.
       0.542
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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