EAQ08069.1 protein (Yoonia vestfoldensis SKA53)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

EAQ08069.1

COG4405 Uncharacterized protein conserved in bacteria. (154 aa)

Predicted Functional Partners:

pheT

0.773

pheT-2

0.705

EAQ08068.1

0.675

EAQ08072.1

0.519

EAQ08067.1

0.503

EAQ06640.1

0.473

EAQ08066.1

0.464

EAQ08073.1

0.460

Your Current Organism:

Yoonia vestfoldensis SKA53

NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EAQ06640.1	EAQ08069.1	SKA53_13871	SKA53_10104	Hypothetical protein.	COG4405 Uncharacterized protein conserved in bacteria.	0.473
EAQ08066.1	EAQ08067.1	SKA53_10089	SKA53_10094	cobN protein; COG1429 Cobalamin biosynthesis protein CobN and related Mg-chelatases.	cob(I)yrinic acid a,c-diamide adenosyltransferase; Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids.	0.961
EAQ08066.1	EAQ08068.1	SKA53_10089	SKA53_10099	cobN protein; COG1429 Cobalamin biosynthesis protein CobN and related Mg-chelatases.	Hypothetical protein.	0.524
EAQ08066.1	EAQ08069.1	SKA53_10089	SKA53_10104	cobN protein; COG1429 Cobalamin biosynthesis protein CobN and related Mg-chelatases.	COG4405 Uncharacterized protein conserved in bacteria.	0.464
EAQ08066.1	pheT	SKA53_10089	SKA53_10109	cobN protein; COG1429 Cobalamin biosynthesis protein CobN and related Mg-chelatases.	phenylalanyl-tRNA synthetase beta subunit.	0.464
EAQ08067.1	EAQ08066.1	SKA53_10094	SKA53_10089	cob(I)yrinic acid a,c-diamide adenosyltransferase; Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids.	cobN protein; COG1429 Cobalamin biosynthesis protein CobN and related Mg-chelatases.	0.961
EAQ08067.1	EAQ08068.1	SKA53_10094	SKA53_10099	cob(I)yrinic acid a,c-diamide adenosyltransferase; Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids.	Hypothetical protein.	0.573
EAQ08067.1	EAQ08069.1	SKA53_10094	SKA53_10104	cob(I)yrinic acid a,c-diamide adenosyltransferase; Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids.	COG4405 Uncharacterized protein conserved in bacteria.	0.503
EAQ08067.1	pheT	SKA53_10094	SKA53_10109	cob(I)yrinic acid a,c-diamide adenosyltransferase; Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids.	phenylalanyl-tRNA synthetase beta subunit.	0.503
EAQ08068.1	EAQ08066.1	SKA53_10099	SKA53_10089	Hypothetical protein.	cobN protein; COG1429 Cobalamin biosynthesis protein CobN and related Mg-chelatases.	0.524
EAQ08068.1	EAQ08067.1	SKA53_10099	SKA53_10094	Hypothetical protein.	cob(I)yrinic acid a,c-diamide adenosyltransferase; Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids.	0.573
EAQ08068.1	EAQ08069.1	SKA53_10099	SKA53_10104	Hypothetical protein.	COG4405 Uncharacterized protein conserved in bacteria.	0.675
EAQ08068.1	pheT	SKA53_10099	SKA53_10109	Hypothetical protein.	phenylalanyl-tRNA synthetase beta subunit.	0.675
EAQ08068.1	pheT-2	SKA53_10099	SKA53_10114	Hypothetical protein.	phenylalanyl-tRNA synthetase, beta subunit; COG0073 EMAP domain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.	0.565
EAQ08069.1	EAQ06640.1	SKA53_10104	SKA53_13871	COG4405 Uncharacterized protein conserved in bacteria.	Hypothetical protein.	0.473
EAQ08069.1	EAQ08066.1	SKA53_10104	SKA53_10089	COG4405 Uncharacterized protein conserved in bacteria.	cobN protein; COG1429 Cobalamin biosynthesis protein CobN and related Mg-chelatases.	0.464
EAQ08069.1	EAQ08067.1	SKA53_10104	SKA53_10094	COG4405 Uncharacterized protein conserved in bacteria.	cob(I)yrinic acid a,c-diamide adenosyltransferase; Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids.	0.503
EAQ08069.1	EAQ08068.1	SKA53_10104	SKA53_10099	COG4405 Uncharacterized protein conserved in bacteria.	Hypothetical protein.	0.675
EAQ08069.1	EAQ08072.1	SKA53_10104	SKA53_10119	COG4405 Uncharacterized protein conserved in bacteria.	Methyltransferase, UbiE/COQ5 family; COG0500 SAM-dependent methyltransferases.	0.519
EAQ08069.1	EAQ08073.1	SKA53_10104	SKA53_10124	COG4405 Uncharacterized protein conserved in bacteria.	Hypothetical protein.	0.460