rpmI protein (Yoonia vestfoldensis SKA53) - STRING interaction network

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Score

rpmI

COG0291 Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. (66 aa)

Predicted Functional Partners:

rplT

0.998

rpoC

0.995

rplJ

0.992

rplM

0.991

rpmF

0.991

rpsF

0.991

rpmB

0.991

rpsD

0.991

rpsL

0.991

EAQ06556.1

0.991

Your Current Organism:

Yoonia vestfoldensis SKA53

NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EAQ06556.1	rplJ	SKA53_13451	SKA53_13263	COG0099 Ribosomal protein S13; Belongs to the universal ribosomal protein uS13 family.	Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	0.993
EAQ06556.1	rplM	SKA53_13451	SKA53_04443	COG0099 Ribosomal protein S13; Belongs to the universal ribosomal protein uS13 family.	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.997
EAQ06556.1	rplT	SKA53_13451	SKA53_10219	COG0099 Ribosomal protein S13; Belongs to the universal ribosomal protein uS13 family.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.993
EAQ06556.1	rpmB	SKA53_13451	SKA53_09474	COG0099 Ribosomal protein S13; Belongs to the universal ribosomal protein uS13 family.	COG0227 Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.985
EAQ06556.1	rpmF	SKA53_13451	SKA53_05348	COG0099 Ribosomal protein S13; Belongs to the universal ribosomal protein uS13 family.	COG0333 Ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.991
EAQ06556.1	rpmI	SKA53_13451	SKA53_10224	COG0099 Ribosomal protein S13; Belongs to the universal ribosomal protein uS13 family.	COG0291 Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.	0.991
EAQ06556.1	rpoC	SKA53_13451	SKA53_13278	COG0099 Ribosomal protein S13; Belongs to the universal ribosomal protein uS13 family.	DNA-directed RNA polymerase beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
EAQ06556.1	rpsD	SKA53_13451	SKA53_09654	COG0099 Ribosomal protein S13; Belongs to the universal ribosomal protein uS13 family.	30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.998
EAQ06556.1	rpsF	SKA53_13451	SKA53_05775	COG0099 Ribosomal protein S13; Belongs to the universal ribosomal protein uS13 family.	Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.991
EAQ06556.1	rpsL	SKA53_13451	SKA53_13293	COG0099 Ribosomal protein S13; Belongs to the universal ribosomal protein uS13 family.	30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	0.998
rplJ	EAQ06556.1	SKA53_13263	SKA53_13451	Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	COG0099 Ribosomal protein S13; Belongs to the universal ribosomal protein uS13 family.	0.993
rplJ	rplM	SKA53_13263	SKA53_04443	Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.995
rplJ	rplT	SKA53_13263	SKA53_10219	Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.992
rplJ	rpmB	SKA53_13263	SKA53_09474	Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	COG0227 Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.983
rplJ	rpmF	SKA53_13263	SKA53_05348	Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	COG0333 Ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.990
rplJ	rpmI	SKA53_13263	SKA53_10224	Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	COG0291 Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.	0.992
rplJ	rpoC	SKA53_13263	SKA53_13278	Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	DNA-directed RNA polymerase beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rplJ	rpsD	SKA53_13263	SKA53_09654	Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.992
rplJ	rpsF	SKA53_13263	SKA53_05775	Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.991
rplJ	rpsL	SKA53_13263	SKA53_13293	Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	0.992