Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EAQ08115.1Transcriptional regulator, RpiR family; COG1737 Transcriptional regulators. (289 aa)    
Predicted Functional Partners:
EAQ08113.1
TRAP-T family transporter, DctQ (4TMs) subunit; COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
     0.920
EAQ08114.1
Hypothetical protein; COG3931 Predicted N-formylglutamate amidohydrolase.
 
  
 0.904
EAQ08111.1
Bacterial extracellular solute-binding protein, family 7; COG4663 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component.
 
     0.858
EAQ08112.1
Putative TRAP-T family transporter, DctM (12TMs) subunit; COG4664 TRAP-type mannitol/chloroaromatic compound transport system, large permease component.
 
     0.841
EAQ08109.1
COG1012 NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family.
 
 
  0.824
EAQ08110.1
COG0174 Glutamine synthetase.
 
    0.805
EAQ08108.1
COG1454 Alcohol dehydrogenase, class IV.
 
     0.732
EAQ07192.1
5-dehydro-2-deoxygluconokinase; COG0524 Sugar kinases, ribokinase family.
    
 0.682
zwf
Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.
    
 0.629
EAQ06516.1
2-dehydro-3-deoxyphosphogluconate; COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase.
    
 0.629
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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