Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EAQ08131.1phenylacetate-CoA ligase, putative; COG1541 Coenzyme F390 synthetase. (398 aa)    
Predicted Functional Partners:
EAQ08133.1
COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component.
 
    0.920
EAQ06947.1
Ferredoxin; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
  
 
 0.919
EAQ05467.1
COG2124 Cytochrome P450.
  
 
 0.901
EAQ08132.1
COG0410 ABC-type branched-chain amino acid transport systems, ATPase component.
 
 
  0.900
EAQ08137.1
COG1022 Long-chain acyl-CoA synthetases (AMP-forming).
 
    0.860
EAQ08134.1
COG4177 ABC-type branched-chain amino acid transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
    0.858
gatA
glutamyl-tRNA amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).
    
  0.823
EAQ08135.1
COG0559 Branched-chain amino acid ABC-type transport system, permease components; Belongs to the binding-protein-dependent transport system permease family.
 
    0.807
EAQ08136.1
COG0411 ABC-type branched-chain amino acid transport systems, ATPase component.
 
    0.797
EAQ05324.1
N-carbamyl-D-amino acid amidohydrolase; COG0388 Predicted amidohydrolase.
     
  0.778
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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