Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EAQ08137.1COG1022 Long-chain acyl-CoA synthetases (AMP-forming). (652 aa)    
Predicted Functional Partners:
EAQ08136.1
COG0411 ABC-type branched-chain amino acid transport systems, ATPase component.
 
    0.950
EAQ08133.1
COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component.
 
    0.914
EAQ08135.1
COG0559 Branched-chain amino acid ABC-type transport system, permease components; Belongs to the binding-protein-dependent transport system permease family.
 
    0.888
EAQ08134.1
COG4177 ABC-type branched-chain amino acid transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
    0.870
EAQ08131.1
phenylacetate-CoA ligase, putative; COG1541 Coenzyme F390 synthetase.
 
    0.860
EAQ06061.1
Hypothetical protein; COG0642 Signal transduction histidine kinase.
   
 
  0.819
EAQ08132.1
COG0410 ABC-type branched-chain amino acid transport systems, ATPase component.
 
    0.805
EAQ08009.1
COG0642 Signal transduction histidine kinase.
   
 
  0.735
EAQ05201.1
Sensory box sensor histidine kianse/response regulator; COG0642 Signal transduction histidine kinase.
  
 
  0.717
rplE
Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.
    
   0.701
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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