STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ08140.1Hypothetical protein. (159 aa)    
Predicted Functional Partners:
EAQ07916.1
enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase /3-hydroxybutyryl-CoA epimerase; COG1024 Enoyl-CoA hydratase/carnithine racemase.
 
 
 0.820
mepA
COG3770 Murein endopeptidase.
  
    0.730
EAQ08141.1
Membrane protein, putative; COG2270 Permeases of the major facilitator superfamily.
       0.729
EAQ08139.1
YGGT family protein; COG0762 Predicted integral membrane protein.
       0.707
EAQ08143.1
COG4222 Uncharacterized protein conserved in bacteria.
       0.634
EAQ06206.1
COG0236 Acyl carrier protein.
 
 0.598
EAQ05256.1
COG0331 (acyl-carrier-protein) S-malonyltransferase.
  
 
 0.576
EAQ08144.1
Membrane protein, putative; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily.
       0.555
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 0.476
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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