STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mepACOG3770 Murein endopeptidase. (298 aa)    
Predicted Functional Partners:
EAQ08141.1
Membrane protein, putative; COG2270 Permeases of the major facilitator superfamily.
       0.855
EAQ08140.1
Hypothetical protein.
       0.732
EAQ08143.1
COG4222 Uncharacterized protein conserved in bacteria.
       0.721
EAQ07437.1
Tat (twin-arginine translocation) pathway signal sequence domain protein; COG3108 Uncharacterized protein conserved in bacteria.
  
     0.708
EAQ05528.1
COG3108 Uncharacterized protein conserved in bacteria.
  
     0.664
EAQ08144.1
Membrane protein, putative; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily.
       0.631
EAQ08139.1
YGGT family protein; COG0762 Predicted integral membrane protein.
       0.627
EAQ07743.1
Hypothetical protein; COG3106 Predicted ATPase.
  
     0.619
EAQ07892.1
COG1376 Uncharacterized protein conserved in bacteria.
  
     0.569
EAQ07742.1
COG3768 Predicted membrane protein.
  
     0.482
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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