Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
mepACOG3770 Murein endopeptidase. (298 aa)    
Predicted Functional Partners:
EAQ08141.1
Membrane protein, putative; COG2270 Permeases of the major facilitator superfamily.
       0.853
EAQ08140.1
Hypothetical protein.
  
    0.730
EAQ08143.1
COG4222 Uncharacterized protein conserved in bacteria.
       0.718
EAQ07437.1
Tat (twin-arginine translocation) pathway signal sequence domain protein; COG3108 Uncharacterized protein conserved in bacteria.
  
     0.708
EAQ05528.1
COG3108 Uncharacterized protein conserved in bacteria.
  
     0.664
EAQ08144.1
Membrane protein, putative; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily.
       0.627
EAQ08139.1
YGGT family protein; COG0762 Predicted integral membrane protein.
       0.626
EAQ07743.1
Hypothetical protein; COG3106 Predicted ATPase.
  
     0.619
EAQ07892.1
COG1376 Uncharacterized protein conserved in bacteria.
  
     0.569
EAQ07742.1
COG3768 Predicted membrane protein.
  
     0.482
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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