Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EAQ08166.1Flagellar protein FlgJ, putative. (97 aa)    
Predicted Functional Partners:
EAQ07446.1
COG1749 Flagellar hook protein FlgE.
  
  
 0.975
EAQ08165.1
COG3144 Flagellar hook-length control protein.
 
  
 0.974
flgH
Flagellar L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
  
  
 0.974
EAQ05274.1
COG1536 Flagellar motor switch protein.
 
  
 0.969
EAQ08164.1
Possible FlgD protein; COG1843 Flagellar hook capping protein.
 
  
 0.966
EAQ07428.1
Probable flagellar motor switch protein FliG; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
  
  
 0.947
EAQ07448.1
COG1558 Flagellar basal body rod protein; Belongs to the flagella basal body rod proteins family.
  
  
 0.940
EAQ08167.1
Hypothetical protein.
 
     0.934
fliQ
Flagellar protein FliQ; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family.
  
  
 0.921
EAQ07166.1
Possible flagellar switch protein FliM; COG0477 Permeases of the major facilitator superfamily.
 
 
 0.906
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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