Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ08176.1Type I secretion target repeat protein. (313 aa)    
Predicted Functional Partners:
EAQ06838.1
Hypothetical protein.
 
   0.770
EAQ07471.1
core-2/I-branching enzyme family protein.
  
     0.769
EAQ07760.1
FtsK/SpoIIIE family protein; COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins.
    
 
 0.753
EAQ07472.1
Hypothetical protein.
  
     0.752
EAQ05716.1
Putative Hemin receptor protein HmuR; COG1629 Outer membrane receptor proteins, mostly Fe transport.
    
 
 0.742
EAQ07473.1
Hypothetical protein; COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
     0.739
EAQ07470.1
Hypothetical protein.
  
     0.726
EAQ05437.1
Hypothetical protein.
  
     0.720
EAQ07122.1
COG3562 Capsule polysaccharide export protein.
  
     0.706
EAQ06737.1
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
    
 0.699
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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