Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ08213.1Hypothetical protein. (223 aa)    
Predicted Functional Partners:
EAQ08212.1
Glutamine-pyruvate aminotransferase; COG0067 Glutamate synthase domain 1.
     
 0.838
EAQ08214.1
COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases.
     
 0.819
EAQ06700.1
MobC protein; COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
  
     0.748
EAQ05273.1
Possible transcriptional activator; COG2771 DNA-binding HTH domain-containing proteins.
  
     0.700
EAQ06078.1
Hypothetical protein.
  
     0.700
EAQ05272.1
Transcriptional regulator, LuxR family; COG2771 DNA-binding HTH domain-containing proteins.
  
     0.691
EAQ08130.1
Hypothetical protein; COG2183 Transcriptional accessory protein.
  
     0.686
EAQ06784.1
Hypothetical protein.
  
     0.668
EAQ06694.1
Hypothetical protein; COG0621 2-methylthioadenine synthetase.
  
     0.630
EAQ06509.1
Hypothetical protein.
  
     0.622
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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