Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ08219.1Hypothetical protein. (436 aa)    
Predicted Functional Partners:
EAQ08218.1
Hypothetical protein; COG0582 Integrase.
 
     0.946
EAQ08253.1
Hypothetical protein; COG0582 Integrase.
  
     0.772
EAQ08226.1
COG0582 Integrase; Belongs to the 'phage' integrase family.
  
     0.766
EAQ08260.1
COG0582 Integrase.
  
     0.766
EAQ08217.1
Site-specific recombinase, phage integrase family; Belongs to the 'phage' integrase family.
       0.741
EAQ07446.1
COG1749 Flagellar hook protein FlgE.
  
     0.697
EAQ07440.1
COG1256 Flagellar hook-associated protein; Belongs to the flagella basal body rod proteins family.
  
     0.694
EAQ07402.1
Putative flagellar protein FliS; COG1516 Flagellin-specific chaperone FliS.
  
     0.681
EAQ07452.1
Possible flagellar hook-associated protein 2 (filament cap protein); Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.
  
     0.595
EAQ05987.1
Hypothetical protein.
  
     0.593
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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