STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ08238.1Hypothetical protein; COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain. (331 aa)    
Predicted Functional Partners:
EAQ08234.1
COG4583 Sarcosine oxidase gamma subunit.
 
    0.857
EAQ08236.1
Hypothetical protein; COG4311 Sarcosine oxidase delta subunit.
 
    0.850
EAQ08235.1
Sarcosine oxidase, alpha subunit; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases; Belongs to the GcvT family.
 
     0.838
EAQ08237.1
Hypothetical protein; COG0665 Glycine/D-amino acid oxidases (deaminating).
 
     0.778
rpoD
RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
   0.477
EAQ08033.1
Transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins.
  
   0.441
EAQ08244.1
Creatinine amidohydrolase; COG1402 Uncharacterized protein, putative amidase.
  
     0.402
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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