Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EAQ08260.1COG0582 Integrase. (414 aa)    
Predicted Functional Partners:
EAQ08253.1
Hypothetical protein; COG0582 Integrase.
 
     0.801
EAQ08255.1
Hypothetical protein.
 
     0.797
EAQ08261.1
Hypothetical protein.
       0.773
EAQ08218.1
Hypothetical protein; COG0582 Integrase.
  
     0.768
EAQ08219.1
Hypothetical protein.
  
     0.766
EAQ05497.1
Hypothetical protein; COG0477 Permeases of the major facilitator superfamily.
  
     0.682
EAQ06935.1
Bifunctional PutA protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
     
  0.644
EAQ05491.1
Metal dependent phosphohydrolase; COG1418 Predicted HD superfamily hydrolase.
  
     0.579
EAQ05489.1
Hypothetical protein; COG1418 Predicted HD superfamily hydrolase.
  
     0.553
EAQ08258.1
Hypothetical protein.
       0.524
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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