Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ07393.1Hypothetical protein. (134 aa)    
Predicted Functional Partners:
EAQ07394.1
Hypothetical protein.
       0.639
EAQ07395.1
Hypothetical protein; COG0564 Pseudouridylate synthases, 23S RNA-specific.
       0.639
EAQ07396.1
Flagellar basal-body P-ring formation protein FlgA; Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P- ring assembly; Belongs to the FlgA family.
       0.551
EAQ07397.1
COG3170 Tfp pilus assembly protein FimV.
       0.551
EAQ07398.1
Hypothetical protein.
       0.551
EAQ07399.1
Hypothetical protein; COG1370 Prefoldin, molecular chaperone implicated in de novo protein folding, alpha subunit.
       0.449
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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