Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ07406.1Hypothetical protein; COG0068 Hydrogenase maturation factor. (167 aa)    
Predicted Functional Partners:
EAQ06061.1
Hypothetical protein; COG0642 Signal transduction histidine kinase.
   
 0.892
ribB
Bifunctional GTP cyclohydrolaseII/3,4-dihydroxy-2butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
  
 
 0.852
EAQ07408.1
COG1360 Flagellar motor protein.
 
    0.831
EAQ06603.1
Hypothetical protein; COG1716 FOG: FHA domain.
   
 
 0.819
EAQ08009.1
COG0642 Signal transduction histidine kinase.
    
 0.766
EAQ05981.1
Site-specific recombinase, phage integrase family; COG0582 Integrase; Belongs to the 'phage' integrase family.
  
     0.712
EAQ07446.1
COG1749 Flagellar hook protein FlgE.
  
     0.704
EAQ07407.1
COG1291 Flagellar motor component.
 
     0.656
EAQ05987.1
Hypothetical protein.
  
    0.640
EAQ07440.1
COG1256 Flagellar hook-associated protein; Belongs to the flagella basal body rod proteins family.
  
     0.616
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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