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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ07406.1Hypothetical protein; COG0068 Hydrogenase maturation factor. (167 aa)    
Predicted Functional Partners:
EAQ06603.1
Hypothetical protein; COG1716 FOG: FHA domain.
   
 
 0.932
EAQ06061.1
Hypothetical protein; COG0642 Signal transduction histidine kinase.
   
 0.906
EAQ07408.1
COG1360 Flagellar motor protein.
 
    0.831
ribB
Bifunctional GTP cyclohydrolaseII/3,4-dihydroxy-2butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
  
 
 0.824
EAQ06602.1
COG0631 Serine/threonine protein phosphatase.
  
 0.770
EAQ05981.1
Site-specific recombinase, phage integrase family; COG0582 Integrase; Belongs to the 'phage' integrase family.
  
     0.712
EAQ08009.1
COG0642 Signal transduction histidine kinase.
    
 0.710
EAQ07446.1
COG1749 Flagellar hook protein FlgE.
  
     0.704
EAQ07407.1
COG1291 Flagellar motor component.
 
     0.657
EAQ05987.1
Hypothetical protein.
  
    0.638
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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