STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ07412.1Hypothetical protein; COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase. (99 aa)    
Predicted Functional Partners:
EAQ07413.1
Hypothetical protein; COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.
       0.773
EAQ07414.1
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
       0.773
EAQ07415.1
Hypothetical protein.
       0.437
EAQ07416.1
Flagellar protein FlhB; COG1377 Flagellar biosynthesis pathway, component FlhB.
       0.437
EAQ07417.1
Flagellar protein FliR; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family.
       0.437
fliQ
Flagellar protein FliQ; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family.
       0.437
fliP
Flagellar transport protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.
       0.437
EAQ07420.1
Hypothetical protein.
       0.420
EAQ07411.1
Sigma-54 factor (RpoN2); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
       0.418
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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