Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EAQ07435.1Sigma factor FliA (Sigma-28 group, flagellar); COG1191 DNA-directed RNA polymerase specialized sigma subunit; Belongs to the sigma-70 factor family. (239 aa)    
Predicted Functional Partners:
EAQ07395.1
Hypothetical protein; COG0564 Pseudouridylate synthases, 23S RNA-specific.
  
 0.989
EAQ07448.1
COG1558 Flagellar basal body rod protein; Belongs to the flagella basal body rod proteins family.
 
 
 0.988
EAQ07440.1
COG1256 Flagellar hook-associated protein; Belongs to the flagella basal body rod proteins family.
 
  
 0.986
EAQ07449.1
Flagellar proximal rod protein FlgB; COG1815 Flagellar basal body protein.
 
 
 0.982
EAQ07421.1
Flagellar motor switch FliN protein; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.
 
  
 0.977
EAQ07422.1
COG1868 Flagellar motor switch protein.
 
 
 0.977
EAQ07439.1
COG1344 Flagellin and related hook-associated proteins.
 
  
 0.977
EAQ07446.1
COG1749 Flagellar hook protein FlgE.
 
  
 0.976
EAQ07407.1
COG1291 Flagellar motor component.
 
  
 0.975
EAQ07423.1
Flagellar biosynthesis protein, FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
 
  
 0.974
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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