Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EAQ07502.1Competence protein F, putative; COG1040 Predicted amidophosphoribosyltransferases. (241 aa)    
Predicted Functional Partners:
EAQ06118.1
DNA processing protein DprA, putative; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake.
 
 
 0.884
EAQ06817.1
Competence protein ComM; COG0606 Predicted ATPase with chaperone activity.
 
  
 0.823
EAQ07328.1
Competence protein; COG0658 Predicted membrane metal-binding protein.
 
  
 0.809
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
  
 0.804
EAQ05397.1
Hypothetical protein; COG1820 N-acetylglucosamine-6-phosphate deacetylase.
  
    0.801
EAQ07977.1
COG0287 Prephenate dehydrogenase.
   
    0.801
EAQ07500.1
Hydrolase, carbon-nitrogen family; COG0388 Predicted amidohydrolase.
     
 0.792
EAQ07501.1
Glutaredoxin; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.
       0.787
EAQ07861.1
Capsular polysaccharide export ATP-binding protein; COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component.
   
    0.778
EAQ07448.1
COG1558 Flagellar basal body rod protein; Belongs to the flagella basal body rod proteins family.
   
   0.757
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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