EAQ07502.1 protein (Yoonia vestfoldensis SKA53)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EAQ07502.1

Competence protein F, putative; COG1040 Predicted amidophosphoribosyltransferases. (241 aa)

Predicted Functional Partners:

EAQ07484.1

0.962

EAQ06118.1

0.893

EAQ06817.1

0.827

EAQ07328.1

0.815

fliP

0.801

EAQ07500.1

0.793

EAQ07501.1

0.789

EAQ07429.1

0.774

EAQ07977.1

0.773

apt

0.760

Your Current Organism:

Yoonia vestfoldensis SKA53

NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EAQ06118.1	EAQ06817.1	SKA53_08431	SKA53_14756	DNA processing protein DprA, putative; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake.	Competence protein ComM; COG0606 Predicted ATPase with chaperone activity.	0.789
EAQ06118.1	EAQ07328.1	SKA53_08431	SKA53_02991	DNA processing protein DprA, putative; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake.	Competence protein; COG0658 Predicted membrane metal-binding protein.	0.836
EAQ06118.1	EAQ07429.1	SKA53_08431	SKA53_11368	DNA processing protein DprA, putative; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake.	Flagellar FliF M-ring protein; COG1766 Flagellar biosynthesis/type III secretory pathway lipoprotein.	0.589
EAQ06118.1	EAQ07484.1	SKA53_08431	SKA53_11643	DNA processing protein DprA, putative; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake.	COG2003 DNA repair proteins; Belongs to the UPF0758 family.	0.669
EAQ06118.1	EAQ07502.1	SKA53_08431	SKA53_11733	DNA processing protein DprA, putative; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake.	Competence protein F, putative; COG1040 Predicted amidophosphoribosyltransferases.	0.893
EAQ06118.1	fliP	SKA53_08431	SKA53_11318	DNA processing protein DprA, putative; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake.	Flagellar transport protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.	0.811
EAQ06817.1	EAQ06118.1	SKA53_14756	SKA53_08431	Competence protein ComM; COG0606 Predicted ATPase with chaperone activity.	DNA processing protein DprA, putative; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake.	0.789
EAQ06817.1	EAQ07328.1	SKA53_14756	SKA53_02991	Competence protein ComM; COG0606 Predicted ATPase with chaperone activity.	Competence protein; COG0658 Predicted membrane metal-binding protein.	0.535
EAQ06817.1	EAQ07484.1	SKA53_14756	SKA53_11643	Competence protein ComM; COG0606 Predicted ATPase with chaperone activity.	COG2003 DNA repair proteins; Belongs to the UPF0758 family.	0.512
EAQ06817.1	EAQ07502.1	SKA53_14756	SKA53_11733	Competence protein ComM; COG0606 Predicted ATPase with chaperone activity.	Competence protein F, putative; COG1040 Predicted amidophosphoribosyltransferases.	0.827
EAQ07328.1	EAQ06118.1	SKA53_02991	SKA53_08431	Competence protein; COG0658 Predicted membrane metal-binding protein.	DNA processing protein DprA, putative; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake.	0.836
EAQ07328.1	EAQ06817.1	SKA53_02991	SKA53_14756	Competence protein; COG0658 Predicted membrane metal-binding protein.	Competence protein ComM; COG0606 Predicted ATPase with chaperone activity.	0.535
EAQ07328.1	EAQ07484.1	SKA53_02991	SKA53_11643	Competence protein; COG0658 Predicted membrane metal-binding protein.	COG2003 DNA repair proteins; Belongs to the UPF0758 family.	0.598
EAQ07328.1	EAQ07502.1	SKA53_02991	SKA53_11733	Competence protein; COG0658 Predicted membrane metal-binding protein.	Competence protein F, putative; COG1040 Predicted amidophosphoribosyltransferases.	0.815
EAQ07328.1	fliP	SKA53_02991	SKA53_11318	Competence protein; COG0658 Predicted membrane metal-binding protein.	Flagellar transport protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.	0.504
EAQ07429.1	EAQ06118.1	SKA53_11368	SKA53_08431	Flagellar FliF M-ring protein; COG1766 Flagellar biosynthesis/type III secretory pathway lipoprotein.	DNA processing protein DprA, putative; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake.	0.589
EAQ07429.1	EAQ07484.1	SKA53_11368	SKA53_11643	Flagellar FliF M-ring protein; COG1766 Flagellar biosynthesis/type III secretory pathway lipoprotein.	COG2003 DNA repair proteins; Belongs to the UPF0758 family.	0.504
EAQ07429.1	EAQ07502.1	SKA53_11368	SKA53_11733	Flagellar FliF M-ring protein; COG1766 Flagellar biosynthesis/type III secretory pathway lipoprotein.	Competence protein F, putative; COG1040 Predicted amidophosphoribosyltransferases.	0.774
EAQ07429.1	fliP	SKA53_11368	SKA53_11318	Flagellar FliF M-ring protein; COG1766 Flagellar biosynthesis/type III secretory pathway lipoprotein.	Flagellar transport protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.	0.999
EAQ07484.1	EAQ06118.1	SKA53_11643	SKA53_08431	COG2003 DNA repair proteins; Belongs to the UPF0758 family.	DNA processing protein DprA, putative; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake.	0.669