Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EAQ07510.1ABC transporter, transmembrane ATP-binding protein; COG1132 ABC-type multidrug transport system, ATPase and permease components. (611 aa)    
Predicted Functional Partners:
EAQ07508.1
23S rRNA (Uracil-5-)-methyltransferase rumA; COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.814
EAQ07509.1
ABC multidrug efflux pump, fused ATPase and inner membrane subunits; COG1132 ABC-type multidrug transport system, ATPase and permease components.
 
    
0.793
EAQ05346.1
ATPase; COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain.
   
  0.756
EAQ07512.1
Hydrolase, NUDIX family; COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes.
  
   0.701
EAQ07511.1
polyA polymerase family protein; COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
  
    0.671
EAQ07513.1
Chaperonin, 33 kDa; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress; Belongs to the HSP33 family.
       0.669
EAQ07507.1
ErfK/YbiS/YcfS/YnhG family protein; COG3034 Uncharacterized protein conserved in bacteria.
       0.564
EAQ07514.1
Hydrolase, NUDIX family; COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; Belongs to the Nudix hydrolase family.
  
   0.509
EAQ06096.1
Putative Acetoin utilization protein; COG0123 Deacetylases, including yeast histone deacetylase and acetoin utilization protein.
  
  0.493
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
  0.472
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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