Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ07540.1COG4395 Uncharacterized protein conserved in bacteria. (211 aa)    
Predicted Functional Partners:
EAQ07542.1
Putative Smr; COG2840 Uncharacterized protein conserved in bacteria.
 
     0.810
EAQ07541.1
MltA/3D domain protein; COG2821 Membrane-bound lytic murein transglycosylase.
       0.763
EAQ06906.1
COG3820 Uncharacterized protein conserved in bacteria.
  
     0.736
secB
Preprotein translocase subunit SecB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA.
 
     0.713
EAQ05951.1
Hypothetical protein; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
  
     0.712
EAQ07539.1
FxsA; COG3030 Protein affecting phage T7 exclusion by the F plasmid.
       0.696
EAQ05443.1
COG3814 Uncharacterized protein conserved in bacteria.
  
     0.687
EAQ07093.1
Hypothetical protein.
  
     0.667
EAQ06667.1
Hypothetical protein.
  
     0.636
EAQ07156.1
COG3761 NADH:ubiquinone oxidoreductase 17.2 kD subunit.
  
     0.626
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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