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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ07543.1COG0477 Permeases of the major facilitator superfamily. (411 aa)    
Predicted Functional Partners:
EAQ07709.1
Putative periplasmic iron-binding protein; COG0642 Signal transduction histidine kinase.
  
  
 0.676
hslU
ATP-dependent protease ATP-binding subunit; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis.
       0.673
hslV
ATP-dependent protease peptidase subunit; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.
       0.637
EAQ07545.1
Hypothetical protein; COG0004 Ammonia permease.
       0.594
EAQ06480.1
ABC Fe+3 siderophore transporter, periplasmic substrate-binding protein; COG1840 ABC-type Fe3+ transport system, periplasmic component.
  
  
 0.580
EAQ06837.1
Hypothetical protein.
  
     0.565
EAQ05288.1
Hypothetical protein; COG0477 Permeases of the major facilitator superfamily.
 
  
 0.553
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.534
EAQ06001.1
Serine/Threonine protein kinase and Signal Transduction Histidine Kinase; COG2202 FOG: PAS/PAC domain.
    
 0.502
EAQ07547.1
Hypothetical protein.
       0.430
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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