STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ07556.1Photosynthetic apparatus regulatory protein RegA; COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain. (186 aa)    
Predicted Functional Partners:
EAQ07555.1
Sensor histidine kinase PrrB (RegB); COG0642 Signal transduction histidine kinase.
 
 0.995
EAQ06061.1
Hypothetical protein; COG0642 Signal transduction histidine kinase.
 
 
 0.922
EAQ08009.1
COG0642 Signal transduction histidine kinase.
   
 0.711
EAQ05962.1
Hypothetical protein.
  
     0.668
EAQ05448.1
COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems.
  
  
 0.646
EAQ05201.1
Sensory box sensor histidine kianse/response regulator; COG0642 Signal transduction histidine kinase.
   
 0.633
EAQ07554.1
Hypothetical protein; COG2202 FOG: PAS/PAC domain.
    
  0.630
EAQ05388.1
COG0642 Signal transduction histidine kinase.
 
 
  0.615
EAQ06345.1
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
    
 0.615
EAQ06346.1
Methyl-accepting chemotaxis protein McpD; COG2202 FOG: PAS/PAC domain.
    
 0.615
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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