STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ07558.1Transcriptional regulator, PpsR; COG2202 FOG: PAS/PAC domain. (475 aa)    
Predicted Functional Partners:
EAQ07033.1
Possible activator of photopigment and puc with BLUF domain.
  
 
 
 0.964
EAQ07559.1
Regulatory protein, PpaA; COG5012 Predicted cobalamin binding protein.
 
   
 0.959
EAQ05979.1
Putative diguanylate phosphodiesterase (EAL domain) with GAF sensor; COG2200 FOG: EAL domain.
    
 
 0.909
EAQ06616.1
COG2200 FOG: EAL domain.
    
 
 0.909
EAQ07567.1
Reaction center H protein.
 
   
 0.876
EAQ07269.1
Coenzyme B12-binding; COG5012 Predicted cobalamin binding protein.
 
   
 0.873
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
   0.835
EAQ08170.1
Putative light-harvesting 1 (B870) complex assembly protein PucC.
 
     0.817
dusA
tRNA-dihydrouridine synthase A; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs; Belongs to the Dus family. DusA subfamily.
  
  
 0.816
EAQ06393.1
tRNA-dihydrouridine synthase, putative; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.
  
  
 0.816
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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