Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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textmining
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EAQ07559.1Regulatory protein, PpaA; COG5012 Predicted cobalamin binding protein. (219 aa)    
Predicted Functional Partners:
EAQ07558.1
Transcriptional regulator, PpsR; COG2202 FOG: PAS/PAC domain.
 
   
 0.955
EAQ07628.1
LHI alpha, Light-harvesting B875 protein; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
  
   
 0.804
EAQ07627.1
LHI beta, Light-harvesting B875 subunit; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
  
   
 0.802
EAQ07570.1
Hypothetical protein.
 
     0.793
EAQ07572.1
Hypothetical protein; COG0477 Permeases of the major facilitator superfamily.
 
  
 0.792
EAQ07569.1
Hypothetical protein; COG0609 ABC-type Fe3+-siderophore transport system, permease component.
 
     0.791
EAQ08170.1
Putative light-harvesting 1 (B870) complex assembly protein PucC.
 
     0.785
EAQ07567.1
Reaction center H protein.
 
     0.785
acsF
Hypothetical protein; Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME); Belongs to the AcsF family.
 
     0.779
EAQ07621.1
Chlorophyll synthesis pathway, bchC; COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases.
 
 
 0.778
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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