Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EAQ07567.1Reaction center H protein. (257 aa)    
Predicted Functional Partners:
EAQ07629.1
PufL, Photosynthetic reaction center L subunit.
  
 0.999
EAQ07630.1
PufM, photosynthetic reaction center M subunit; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.
  
 0.999
EAQ07628.1
LHI alpha, Light-harvesting B875 protein; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
  
 0.996
EAQ07627.1
LHI beta, Light-harvesting B875 subunit; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
  
 
 0.995
EAQ07565.1
Mg-protoporphyrin IX methyl transferase; COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase.
 
  
 0.992
bchL
Light-independent protochlorophyllide reductase iron protein; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The L component serves as a unique electron donor to the NB-component of the complex, and binds Mg-ATP.
 
  
 0.989
EAQ07566.1
Light-harvesting 1 (B870) complex assembly; COG0477 Permeases of the major facilitator superfamily.
 
  
 0.983
EAQ07560.1
2-vinyl bacteriochlorophyllide hydratase; COG0477 Permeases of the major facilitator superfamily.
 
    0.980
EAQ07568.1
Hypothetical protein.
 
    0.975
EAQ07569.1
Hypothetical protein; COG0609 ABC-type Fe3+-siderophore transport system, permease component.
 
    0.972
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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