STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ07578.1Spheroidene monooxygenase. (233 aa)    
Predicted Functional Partners:
EAQ07620.1
COG0500 SAM-dependent methyltransferases.
  
 
 0.968
EAQ07617.1
Hydroxyneurosporene dehydrogenase.
  
 
 0.951
EAQ07577.1
Magnesium-chelatase, ChlI subunit; Involved in bacteriochlorophyll biosynthesis; introduces a magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX.
  
  
 0.933
EAQ07576.1
Magnesium-chelatase, subunit D; COG1239 Mg-chelatase subunit ChlI.
 
  
 0.909
EAQ07580.1
Squalene/phytoene synthase; COG1562 Phytoene/squalene synthetase.
 
   
 0.891
EAQ07575.1
Magnesium-chelatase, BchO; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
 
    0.864
EAQ07581.1
COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog).
 
  
 0.830
EAQ07570.1
Hypothetical protein.
 
    0.802
EAQ07569.1
Hypothetical protein; COG0609 ABC-type Fe3+-siderophore transport system, permease component.
 
     0.780
EAQ07626.1
Protein pufQ.
  
    0.775
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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