Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EAQ07580.1Squalene/phytoene synthase; COG1562 Phytoene/squalene synthetase. (340 aa)    
Predicted Functional Partners:
EAQ07579.1
COG1233 Phytoene dehydrogenase and related proteins.
 
 0.996
EAQ07618.1
COG1233 Phytoene dehydrogenase and related proteins.
 
 
 0.982
EAQ08171.1
COG0644 Dehydrogenases (flavoproteins).
 
 
 0.978
EAQ07619.1
COG0142 Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.
 
 0.959
EAQ07617.1
Hydroxyneurosporene dehydrogenase.
 
  
 0.919
EAQ06622.1
Decaprenyl diphosphate synthase; COG0142 Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 0.919
EAQ08200.1
COG0142 Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 0.916
EAQ07577.1
Magnesium-chelatase, ChlI subunit; Involved in bacteriochlorophyll biosynthesis; introduces a magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX.
 
  
 0.891
EAQ07578.1
Spheroidene monooxygenase.
 
   
 0.891
EAQ07576.1
Magnesium-chelatase, subunit D; COG1239 Mg-chelatase subunit ChlI.
 
  
 0.879
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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