Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ07593.1Hypothetical protein. (215 aa)    
Predicted Functional Partners:
EAQ06989.1
COG2365 Protein tyrosine/serine phosphatase.
  
     0.743
EAQ06231.1
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
    
 
 0.699
EAQ07658.1
COG3210 Large exoproteins involved in heme utilization or adhesion.
  
     0.564
EAQ08152.1
Hypothetical protein; COG3180 putative ammonia monooxygenase.
  
     0.559
EAQ07465.1
Hypothetical protein.
  
     0.537
EAQ07782.1
Phosphoenolpyruvate carboxykinase.
  
     0.513
EAQ07648.1
Hypothetical protein.
  
   
 0.504
EAQ07087.1
Hypothetical protein.
  
     0.486
bamA
Putative outer membrane protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 
 
 0.479
EAQ05667.1
Hypothetical protein.
  
     0.479
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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