STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ07613.1ABC transporter, periplasmic binding protein; COG4134 ABC-type uncharacterized transport system, periplasmic component. (400 aa)    
Predicted Functional Partners:
EAQ07614.1
ABC transporter, fused inner membrane subunits; COG4135 ABC-type uncharacterized transport system, permease component.
 
 
 0.978
EAQ07615.1
COG4136 ABC-type uncharacterized transport system, ATPase component.
 
   
 0.969
EAQ07612.1
COG0558 Phosphatidylglycerophosphate synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
     0.944
EAQ05705.1
Hypothetical protein.
 
  
 0.576
EAQ07611.1
Hypothetical protein; COG0145 N-methylhydantoinase A/acetone carboxylase, beta subunit.
       0.501
gltX
glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.
   
    0.459
EAQ05742.1
ABC polyamine/opine transporter, inner membrane subunit; COG1177 ABC-type spermidine/putrescine transport system, permease component II.
    
  0.449
EAQ06480.1
ABC Fe+3 siderophore transporter, periplasmic substrate-binding protein; COG1840 ABC-type Fe3+ transport system, periplasmic component.
 
  
  0.424
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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