EAQ07621.1 protein (Yoonia vestfoldensis SKA53)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EAQ07621.1

Chlorophyll synthesis pathway, bchC; COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases. (294 aa)

Predicted Functional Partners:

EAQ07622.1

0.997

EAQ07624.1

0.994

EAQ07625.1

0.990

EAQ07560.1

0.985

EAQ08169.1

0.975

EAQ07576.1

0.925

EAQ07620.1

0.913

EAQ07565.1

0.892

EAQ07619.1

0.885

EAQ07575.1

0.873

Your Current Organism:

Yoonia vestfoldensis SKA53

NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EAQ07560.1	EAQ07565.1	SKA53_12023	SKA53_12048	2-vinyl bacteriochlorophyllide hydratase; COG0477 Permeases of the major facilitator superfamily.	Mg-protoporphyrin IX methyl transferase; COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase.	0.977
EAQ07560.1	EAQ07575.1	SKA53_12023	SKA53_12098	2-vinyl bacteriochlorophyllide hydratase; COG0477 Permeases of the major facilitator superfamily.	Magnesium-chelatase, BchO; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).	0.855
EAQ07560.1	EAQ07576.1	SKA53_12023	SKA53_12103	2-vinyl bacteriochlorophyllide hydratase; COG0477 Permeases of the major facilitator superfamily.	Magnesium-chelatase, subunit D; COG1239 Mg-chelatase subunit ChlI.	0.866
EAQ07560.1	EAQ07619.1	SKA53_12023	SKA53_12318	2-vinyl bacteriochlorophyllide hydratase; COG0477 Permeases of the major facilitator superfamily.	COG0142 Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.	0.704
EAQ07560.1	EAQ07620.1	SKA53_12023	SKA53_12323	2-vinyl bacteriochlorophyllide hydratase; COG0477 Permeases of the major facilitator superfamily.	COG0500 SAM-dependent methyltransferases.	0.796
EAQ07560.1	EAQ07621.1	SKA53_12023	SKA53_12328	2-vinyl bacteriochlorophyllide hydratase; COG0477 Permeases of the major facilitator superfamily.	Chlorophyll synthesis pathway, bchC; COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases.	0.985
EAQ07560.1	EAQ07622.1	SKA53_12023	SKA53_12333	2-vinyl bacteriochlorophyllide hydratase; COG0477 Permeases of the major facilitator superfamily.	Chlorophyllide reductase, BchX subunit; COG1348 Nitrogenase subunit NifH (ATPase); Belongs to the NifH/BchL/ChlL family.	0.991
EAQ07560.1	EAQ07624.1	SKA53_12023	SKA53_12343	2-vinyl bacteriochlorophyllide hydratase; COG0477 Permeases of the major facilitator superfamily.	Chlorophyllide reductase, BchY subunit.	0.979
EAQ07560.1	EAQ07625.1	SKA53_12023	SKA53_12348	2-vinyl bacteriochlorophyllide hydratase; COG0477 Permeases of the major facilitator superfamily.	Putative chlorophyllide reductase, BchZ subunit; COG2710 Nitrogenase molybdenum-iron protein, alpha and beta chains.	0.985
EAQ07560.1	EAQ08169.1	SKA53_12023	SKA53_10604	2-vinyl bacteriochlorophyllide hydratase; COG0477 Permeases of the major facilitator superfamily.	Putative bacteriochlorophyll synthase, 34 kDa subunit; COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases.	0.995
EAQ07565.1	EAQ07560.1	SKA53_12048	SKA53_12023	Mg-protoporphyrin IX methyl transferase; COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase.	2-vinyl bacteriochlorophyllide hydratase; COG0477 Permeases of the major facilitator superfamily.	0.977
EAQ07565.1	EAQ07575.1	SKA53_12048	SKA53_12098	Mg-protoporphyrin IX methyl transferase; COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase.	Magnesium-chelatase, BchO; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).	0.860
EAQ07565.1	EAQ07576.1	SKA53_12048	SKA53_12103	Mg-protoporphyrin IX methyl transferase; COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase.	Magnesium-chelatase, subunit D; COG1239 Mg-chelatase subunit ChlI.	0.982
EAQ07565.1	EAQ07619.1	SKA53_12048	SKA53_12318	Mg-protoporphyrin IX methyl transferase; COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase.	COG0142 Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.	0.735
EAQ07565.1	EAQ07620.1	SKA53_12048	SKA53_12323	Mg-protoporphyrin IX methyl transferase; COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase.	COG0500 SAM-dependent methyltransferases.	0.873
EAQ07565.1	EAQ07621.1	SKA53_12048	SKA53_12328	Mg-protoporphyrin IX methyl transferase; COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase.	Chlorophyll synthesis pathway, bchC; COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases.	0.892
EAQ07565.1	EAQ07622.1	SKA53_12048	SKA53_12333	Mg-protoporphyrin IX methyl transferase; COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase.	Chlorophyllide reductase, BchX subunit; COG1348 Nitrogenase subunit NifH (ATPase); Belongs to the NifH/BchL/ChlL family.	0.888
EAQ07565.1	EAQ07624.1	SKA53_12048	SKA53_12343	Mg-protoporphyrin IX methyl transferase; COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase.	Chlorophyllide reductase, BchY subunit.	0.780
EAQ07565.1	EAQ07625.1	SKA53_12048	SKA53_12348	Mg-protoporphyrin IX methyl transferase; COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase.	Putative chlorophyllide reductase, BchZ subunit; COG2710 Nitrogenase molybdenum-iron protein, alpha and beta chains.	0.917
EAQ07565.1	EAQ08169.1	SKA53_12048	SKA53_10604	Mg-protoporphyrin IX methyl transferase; COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase.	Putative bacteriochlorophyll synthase, 34 kDa subunit; COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases.	0.906