STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ07627.1LHI beta, Light-harvesting B875 subunit; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers. (51 aa)    
Predicted Functional Partners:
EAQ07628.1
LHI alpha, Light-harvesting B875 protein; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
 
 0.999
EAQ07629.1
PufL, Photosynthetic reaction center L subunit.
 
 0.999
EAQ07630.1
PufM, photosynthetic reaction center M subunit; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.
 
 
 0.999
EAQ07567.1
Reaction center H protein.
  
 
 0.997
EAQ05520.1
COG3861 Uncharacterized protein conserved in bacteria.
    
 0.965
EAQ07626.1
Protein pufQ.
 
   
 0.940
EAQ07625.1
Putative chlorophyllide reductase, BchZ subunit; COG2710 Nitrogenase molybdenum-iron protein, alpha and beta chains.
 
   
 0.901
EAQ07624.1
Chlorophyllide reductase, BchY subunit.
 
  
 0.857
acsF
Hypothetical protein; Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME); Belongs to the AcsF family.
  
   
 0.854
EAQ07621.1
Chlorophyll synthesis pathway, bchC; COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases.
 
   
 0.835
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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