Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EAQ07628.1LHI alpha, Light-harvesting B875 protein; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers. (50 aa)    
Predicted Functional Partners:
EAQ07627.1
LHI beta, Light-harvesting B875 subunit; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
 
 0.999
EAQ07629.1
PufL, Photosynthetic reaction center L subunit.
 
 0.999
EAQ07630.1
PufM, photosynthetic reaction center M subunit; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.
 
 0.999
EAQ07567.1
Reaction center H protein.
  
 0.996
EAQ07626.1
Protein pufQ.
 
  
 0.938
EAQ07625.1
Putative chlorophyllide reductase, BchZ subunit; COG2710 Nitrogenase molybdenum-iron protein, alpha and beta chains.
 
   
 0.886
EAQ05660.1
NADH:ubiquinone oxidoreductase 41 kD complex I subunit; COG0468 RecA/RadA recombinase.
    
   0.871
EAQ05520.1
COG3861 Uncharacterized protein conserved in bacteria.
   
 0.853
EAQ07617.1
Hydroxyneurosporene dehydrogenase.
 
     0.839
EAQ07620.1
COG0500 SAM-dependent methyltransferases.
 
     0.826
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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