EAQ07629.1 protein (Yoonia vestfoldensis SKA53)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EAQ07629.1

PufL, Photosynthetic reaction center L subunit. (276 aa)

Predicted Functional Partners:

EAQ07567.1

0.999

EAQ07627.1

0.999

EAQ07628.1

0.999

EAQ07630.1

0.999

EAQ07625.1

0.987

EAQ05520.1

0.984

EAQ07622.1

0.979

EAQ07574.1

0.977

bchL

0.975

EAQ07565.1

0.968

Your Current Organism:

Yoonia vestfoldensis SKA53

NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EAQ05520.1	EAQ07622.1	SKA53_03889	SKA53_12333	COG3861 Uncharacterized protein conserved in bacteria.	Chlorophyllide reductase, BchX subunit; COG1348 Nitrogenase subunit NifH (ATPase); Belongs to the NifH/BchL/ChlL family.	0.484
EAQ05520.1	EAQ07627.1	SKA53_03889	SKA53_12358	COG3861 Uncharacterized protein conserved in bacteria.	LHI beta, Light-harvesting B875 subunit; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	0.965
EAQ05520.1	EAQ07628.1	SKA53_03889	SKA53_12363	COG3861 Uncharacterized protein conserved in bacteria.	LHI alpha, Light-harvesting B875 protein; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	0.965
EAQ05520.1	EAQ07629.1	SKA53_03889	SKA53_12368	COG3861 Uncharacterized protein conserved in bacteria.	PufL, Photosynthetic reaction center L subunit.	0.984
EAQ05520.1	EAQ07630.1	SKA53_03889	SKA53_12373	COG3861 Uncharacterized protein conserved in bacteria.	PufM, photosynthetic reaction center M subunit; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.	0.985
EAQ05520.1	bchL	SKA53_03889	SKA53_12043	COG3861 Uncharacterized protein conserved in bacteria.	Light-independent protochlorophyllide reductase iron protein; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The L component serves as a unique electron donor to the NB-component of the complex, and binds Mg-ATP.	0.535
EAQ07565.1	EAQ07567.1	SKA53_12048	SKA53_12058	Mg-protoporphyrin IX methyl transferase; COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase.	Reaction center H protein.	0.996
EAQ07565.1	EAQ07622.1	SKA53_12048	SKA53_12333	Mg-protoporphyrin IX methyl transferase; COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase.	Chlorophyllide reductase, BchX subunit; COG1348 Nitrogenase subunit NifH (ATPase); Belongs to the NifH/BchL/ChlL family.	0.888
EAQ07565.1	EAQ07625.1	SKA53_12048	SKA53_12348	Mg-protoporphyrin IX methyl transferase; COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase.	Putative chlorophyllide reductase, BchZ subunit; COG2710 Nitrogenase molybdenum-iron protein, alpha and beta chains.	0.917
EAQ07565.1	EAQ07627.1	SKA53_12048	SKA53_12358	Mg-protoporphyrin IX methyl transferase; COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase.	LHI beta, Light-harvesting B875 subunit; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	0.619
EAQ07565.1	EAQ07628.1	SKA53_12048	SKA53_12363	Mg-protoporphyrin IX methyl transferase; COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase.	LHI alpha, Light-harvesting B875 protein; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	0.519
EAQ07565.1	EAQ07629.1	SKA53_12048	SKA53_12368	Mg-protoporphyrin IX methyl transferase; COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase.	PufL, Photosynthetic reaction center L subunit.	0.968
EAQ07565.1	EAQ07630.1	SKA53_12048	SKA53_12373	Mg-protoporphyrin IX methyl transferase; COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase.	PufM, photosynthetic reaction center M subunit; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.	0.968
EAQ07565.1	bchL	SKA53_12048	SKA53_12043	Mg-protoporphyrin IX methyl transferase; COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase.	Light-independent protochlorophyllide reductase iron protein; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The L component serves as a unique electron donor to the NB-component of the complex, and binds Mg-ATP.	0.996
EAQ07567.1	EAQ07565.1	SKA53_12058	SKA53_12048	Reaction center H protein.	Mg-protoporphyrin IX methyl transferase; COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase.	0.996
EAQ07567.1	EAQ07574.1	SKA53_12058	SKA53_12093	Reaction center H protein.	COG3474 Cytochrome c2.	0.977
EAQ07567.1	EAQ07622.1	SKA53_12058	SKA53_12333	Reaction center H protein.	Chlorophyllide reductase, BchX subunit; COG1348 Nitrogenase subunit NifH (ATPase); Belongs to the NifH/BchL/ChlL family.	0.925
EAQ07567.1	EAQ07625.1	SKA53_12058	SKA53_12348	Reaction center H protein.	Putative chlorophyllide reductase, BchZ subunit; COG2710 Nitrogenase molybdenum-iron protein, alpha and beta chains.	0.881
EAQ07567.1	EAQ07627.1	SKA53_12058	SKA53_12358	Reaction center H protein.	LHI beta, Light-harvesting B875 subunit; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	0.997
EAQ07567.1	EAQ07628.1	SKA53_12058	SKA53_12363	Reaction center H protein.	LHI alpha, Light-harvesting B875 protein; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	0.997