STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ07636.1Hypothetical protein. (93 aa)    
Predicted Functional Partners:
EAQ07635.1
Hypothetical protein; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
 
     0.953
EAQ05929.1
Lipoprotein, putative; COG0419 ATPase involved in DNA repair.
  
     0.707
rnhB
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
       0.617
EAQ06508.1
Hypothetical protein.
  
     0.588
EAQ06851.1
Hypothetical protein.
  
     0.585
EAQ06124.1
Hypothetical protein; COG3288 NAD/NADP transhydrogenase alpha subunit.
  
     0.558
EAQ06919.1
Hypothetical protein.
  
     0.557
EAQ06707.1
Lipoprotein, putative.
  
     0.545
EAQ06135.1
Hypothetical protein.
  
     0.529
EAQ07638.1
COG0863 DNA modification methylase; Belongs to the N(4)/N(6)-methyltransferase family.
       0.517
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.