Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ07669.1Hypothetical protein; COG2931 RTX toxins and related Ca2+-binding proteins. (285 aa)    
Predicted Functional Partners:
EAQ06341.1
Type I secretion target repeat protein.
 
      0.816
EAQ05372.1
S-layer protein RsaA; COG2931 RTX toxins and related Ca2+-binding proteins.
 
 
  0.794
EAQ05346.1
ATPase; COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain.
 
  
 0.705
EAQ05362.1
Hypothetical protein; COG2931 RTX toxins and related Ca2+-binding proteins.
  
     0.703
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
     
  0.702
EAQ05347.1
Type I secretion membrane fusion protein, HlyD; COG0845 Membrane-fusion protein.
 
  
 0.698
EAQ06651.1
Type I secretion membrane fusion protein, HlyD family; COG0845 Membrane-fusion protein.
 
  
 0.660
EAQ06005.1
COG3210 Large exoproteins involved in heme utilization or adhesion.
 
 
0.655
EAQ06652.1
COG4618 ABC-type protease/lipase transport system, ATPase and permease components.
 
 
 0.638
EAQ08176.1
Type I secretion target repeat protein.
 
 
  0.627
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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