Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EAQ07671.1COG4333 Uncharacterized protein conserved in bacteria. (170 aa)    
Predicted Functional Partners:
EAQ07670.1
Possible epoxide hydrolase; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
       0.835
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
       0.785
EAQ07669.1
Hypothetical protein; COG2931 RTX toxins and related Ca2+-binding proteins.
       0.563
rpsO
Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
       0.533
EAQ07673.1
Ribosomal protein S6 modification protein; COG4067 Uncharacterized protein conserved in archaea.
       0.500
rimK
S6 modification enzyme RimK; COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); Belongs to the RimK family.
       0.500
EAQ07675.1
Succinylglutamate desuccinylase/aspartoacylase; COG3608 Predicted deacylase.
       0.500
EAQ07858.1
Hypothetical protein.
  
     0.414
EAQ06728.1
Efflux transporter, RND family, MFP subunit; COG0845 Membrane-fusion protein.
  
     0.406
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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