STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ07742.1COG3768 Predicted membrane protein. (326 aa)    
Predicted Functional Partners:
EAQ07743.1
Hypothetical protein; COG3106 Predicted ATPase.
 
  
 0.995
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
       0.710
EAQ06208.1
Hypothetical protein.
  
     0.663
EAQ07453.1
HemY domain protein; COG3071 Uncharacterized enzyme of heme biosynthesis.
  
     0.583
EAQ06716.1
OmpA domain protein; COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
  
     0.527
EAQ05835.1
Glycosyltransferase, family 2; COG1215 Glycosyltransferases, probably involved in cell wall biogenesis.
  
     0.510
EAQ07753.1
COG3118 Thioredoxin domain-containing protein.
   
    0.493
mepA
COG3770 Murein endopeptidase.
  
     0.482
EAQ07454.1
Hypothetical protein.
  
     0.450
EAQ05460.1
Mechanosensitive ion channel family protein; COG0471 Di- and tricarboxylate transporters.
  
     0.444
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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