Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ07746.1COG2911 Uncharacterized protein conserved in bacteria. (1418 aa)    
Predicted Functional Partners:
EAQ07745.1
COG0729 Outer membrane protein.
 
 
 0.997
EAQ07747.1
Dihydrodipicolinate reductase.
 
     0.675
bamA
Putative outer membrane protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
   
 0.546
EAQ05917.1
Hypothetical protein.
  
     0.508
EAQ06231.1
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
 
     0.490
EAQ07021.1
Hypothetical protein.
  
     0.486
EAQ06784.1
Hypothetical protein.
  
     0.485
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
       0.472
EAQ07854.1
Membrane protein, putative; COG0477 Permeases of the major facilitator superfamily.
  
     0.463
EAQ06211.1
Hypothetical protein.
  
     0.461
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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