Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EAQ07748.1Hypothetical protein; COG0477 Permeases of the major facilitator superfamily. (118 aa)    
Predicted Functional Partners:
EAQ07682.1
Sugar/cation symporter, GPH family; COG2211 Na+/melibiose symporter and related transporters.
  
     0.760
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
       0.692
EAQ05446.1
Coproporphyrinogen III oxidase; COG0591 Na+/proline symporter.
  
     0.636
EAQ06735.1
Hypothetical protein.
  
     0.626
EAQ06837.1
Hypothetical protein.
  
     0.553
EAQ07751.1
COG3698 Predicted periplasmic protein.
       0.541
rbfA
Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.
       0.539
EAQ07680.1
Short-chain dehydrogenase/reductase family member; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
     0.519
EAQ07066.1
COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit.
     
  0.481
EAQ06790.1
COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit.
     
  0.481
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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