EAQ07755.1 protein (Yoonia vestfoldensis SKA53)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

EAQ07755.1

Hypothetical protein; Belongs to the UPF0434 family. (59 aa)

Predicted Functional Partners:

EAQ07754.1

0.878

EAQ07753.1

0.796

EAQ07475.1

0.487

EAQ07752.1

0.487

EAQ06669.1

0.473

EAQ06886.1

0.469

EAQ06741.1

0.448

EAQ07756.1

0.442

ribB

0.411

Your Current Organism:

Yoonia vestfoldensis SKA53

NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EAQ06669.1	EAQ07755.1	SKA53_14016	SKA53_12998	Exodeoxyribonuclease III, putative; COG0708 Exonuclease III.	Hypothetical protein; Belongs to the UPF0434 family.	0.473
EAQ06741.1	EAQ07755.1	SKA53_14376	SKA53_12998	COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase.	Hypothetical protein; Belongs to the UPF0434 family.	0.448
EAQ06886.1	EAQ07755.1	SKA53_15101	SKA53_12998	Possible Histidine triad (HIT) protein; COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases.	Hypothetical protein; Belongs to the UPF0434 family.	0.469
EAQ07475.1	EAQ07755.1	SKA53_11598	SKA53_12998	3-deoxy-manno-octulosonate cytidylyltransferase; COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase.	Hypothetical protein; Belongs to the UPF0434 family.	0.487
EAQ07475.1	ribB	SKA53_11598	SKA53_01971	3-deoxy-manno-octulosonate cytidylyltransferase; COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase.	Bifunctional GTP cyclohydrolaseII/3,4-dihydroxy-2butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.	0.544
EAQ07752.1	EAQ07753.1	SKA53_12983	SKA53_12988	Hydrolase, NUDIX family; COG1051 ADP-ribose pyrophosphatase; Belongs to the Nudix hydrolase family.	COG3118 Thioredoxin domain-containing protein.	0.543
EAQ07752.1	EAQ07754.1	SKA53_12983	SKA53_12993	Hydrolase, NUDIX family; COG1051 ADP-ribose pyrophosphatase; Belongs to the Nudix hydrolase family.	Putative ATP-dependent protease La, LON; COG2802 Uncharacterized protein, similar to the N-terminal domain of Lon protease.	0.487
EAQ07752.1	EAQ07755.1	SKA53_12983	SKA53_12998	Hydrolase, NUDIX family; COG1051 ADP-ribose pyrophosphatase; Belongs to the Nudix hydrolase family.	Hypothetical protein; Belongs to the UPF0434 family.	0.487
EAQ07752.1	ribB	SKA53_12983	SKA53_01971	Hydrolase, NUDIX family; COG1051 ADP-ribose pyrophosphatase; Belongs to the Nudix hydrolase family.	Bifunctional GTP cyclohydrolaseII/3,4-dihydroxy-2butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.	0.747
EAQ07753.1	EAQ07752.1	SKA53_12988	SKA53_12983	COG3118 Thioredoxin domain-containing protein.	Hydrolase, NUDIX family; COG1051 ADP-ribose pyrophosphatase; Belongs to the Nudix hydrolase family.	0.543
EAQ07753.1	EAQ07754.1	SKA53_12988	SKA53_12993	COG3118 Thioredoxin domain-containing protein.	Putative ATP-dependent protease La, LON; COG2802 Uncharacterized protein, similar to the N-terminal domain of Lon protease.	0.832
EAQ07753.1	EAQ07755.1	SKA53_12988	SKA53_12998	COG3118 Thioredoxin domain-containing protein.	Hypothetical protein; Belongs to the UPF0434 family.	0.796
EAQ07753.1	EAQ07756.1	SKA53_12988	SKA53_13003	COG3118 Thioredoxin domain-containing protein.	Hypothetical protein.	0.400
EAQ07753.1	ribB	SKA53_12988	SKA53_01971	COG3118 Thioredoxin domain-containing protein.	Bifunctional GTP cyclohydrolaseII/3,4-dihydroxy-2butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.	0.782
EAQ07754.1	EAQ07752.1	SKA53_12993	SKA53_12983	Putative ATP-dependent protease La, LON; COG2802 Uncharacterized protein, similar to the N-terminal domain of Lon protease.	Hydrolase, NUDIX family; COG1051 ADP-ribose pyrophosphatase; Belongs to the Nudix hydrolase family.	0.487
EAQ07754.1	EAQ07753.1	SKA53_12993	SKA53_12988	Putative ATP-dependent protease La, LON; COG2802 Uncharacterized protein, similar to the N-terminal domain of Lon protease.	COG3118 Thioredoxin domain-containing protein.	0.832
EAQ07754.1	EAQ07755.1	SKA53_12993	SKA53_12998	Putative ATP-dependent protease La, LON; COG2802 Uncharacterized protein, similar to the N-terminal domain of Lon protease.	Hypothetical protein; Belongs to the UPF0434 family.	0.878
EAQ07754.1	EAQ07756.1	SKA53_12993	SKA53_13003	Putative ATP-dependent protease La, LON; COG2802 Uncharacterized protein, similar to the N-terminal domain of Lon protease.	Hypothetical protein.	0.442
EAQ07755.1	EAQ06669.1	SKA53_12998	SKA53_14016	Hypothetical protein; Belongs to the UPF0434 family.	Exodeoxyribonuclease III, putative; COG0708 Exonuclease III.	0.473
EAQ07755.1	EAQ06741.1	SKA53_12998	SKA53_14376	Hypothetical protein; Belongs to the UPF0434 family.	COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase.	0.448